CDS

Accession Number TCMCG016C26977
gbkey CDS
Protein Id OMO53514.1
Location complement(join(6677..7075,7263..7439,7569..7679,7928..8173,8340..8399,8516..8821,9059..9202,9308..9838))
Organism Corchorus capsularis
locus_tag CCACVL1_28583

Protein

Length 657aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01015167.1
Definition RNA-processing protein, HAT helix [Corchorus capsularis]
Locus_tag CCACVL1_28583

EGGNOG-MAPPER Annotation

COG_category A
Description PsbB mRNA maturation factor Mbb1
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003727        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005773        [VIEW IN EMBL-EBI]
GO:0005774        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006417        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009526        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009639        [VIEW IN EMBL-EBI]
GO:0009657        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009941        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010114        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0031090        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031969        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0032069        [VIEW IN EMBL-EBI]
GO:0032074        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0034248        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042170        [VIEW IN EMBL-EBI]
GO:0043086        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043621        [VIEW IN EMBL-EBI]
GO:0044092        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044437        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050790        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051336        [VIEW IN EMBL-EBI]
GO:0051346        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0060700        [VIEW IN EMBL-EBI]
GO:0060701        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065009        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098588        [VIEW IN EMBL-EBI]
GO:0098805        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901917        [VIEW IN EMBL-EBI]
GO:1901918        [VIEW IN EMBL-EBI]
GO:1905777        [VIEW IN EMBL-EBI]
GO:1905778        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCGACTCTTCTCTTCTTCCCCTTCGACTACCTCACCAAAACCCAACTTTACACTCTTTTCCCCTTCTCAAAACCCCAACAAATTCAATTTCAAAACAGTTTCGCCCTTCAAAACTCGCCTTCCTTCTTCTTCCCTCCTCTCTGTTCCGCCATGCTCTTCGAAGAGCTCCTCCTCTTCTCCAGTCCTGGACAAAGAGGCAGAAAAAGAAGACTCTGTGGAAGCCCAGAAGGAGGACACTTTCGAGAAGGTCTTGATCGTTCGAAGGCCAGTCATGGATTCTTCTGGGGAAGATGGCCGTGAGAATGAAGAAAGTGAAGCTGAGGCTGAAAATGACGCGACGAAATCATCTTCTATTGATGCTGGGCTTGAAGAGTTCGCCAAGAAGATGCCCATATTTGAGCCTGAAAGAATGGAGTCTGGTGCTGCTCAAGAGAAGCCGCTTTCTGTGAATTTGGACTTGGCCTTGTATAAAGCTAGGGTTTTGGCGAGAAAATATCAATATGAAGAAGCTGAAAAGATACTTCAGAAGTGTATATACTATTGGCCAGAAGATGGGAGGTCATATGTAACATTAGGGAAGATTTTGATCAAGCAATCGAAAAAGGCGGAAGCCAGAGTTGTGTATGAGAGAGGCTGCCAGGCTACTCAAGGAGAAAATCCCTACATTTGGCAGTGCTGGGCTGTGCTGGAGAATAAGGTGGGAAATATAAGAAGGGCTAGAGAACTATTTGATGCGGCCACGGTTGCTGACAAAAGACACATTGCCGCCTGGCATGGATGGGCGGTTCTAGAGCTAAAACAGGGGAATGTCAAGAAGGCAAGGCATCTGCTTGCGAAAGGTCTTAAATTTTGTGGTGGAAATGAGTATATCTATCAAACCCTTGCTATGCTGGAAGCTAAAGCAAATAGGTATGAGCAGGCTCGGTACTTGTTCAGGCAGGCCACCAAGTGCAACCCCAAAAGCTGTGCCAGTTGGCTTGCATGGGCGCAGTTGGAGGTTCAACAGGAAAATATCCGTTCTGCTAGGCTACTGTTTGAGAAAGCAGTCCAGGCGAGCCCCAAGAACAGGTTTGCATGGCATGTTTGGGGAGTTTTTGAAGCTAATATTGGCAATACTGACATGGGAAGAAAACTTTTGAAGATAGGTCATGCAGTCAATCCAAGGGATCCTGTTTTGCTTCAGTCTCTTGCTTTGTTGGAGTATAAACACTCAACAGCAAATCTAGCTCGAGTTTTATTTAGGAGAGCCTCTGAGCTGGACCCACGACACCAACCAGTGTGGATTGCATGGGGATGGATGGAATGGAAGGAAGGGAATATATCATCAGCAAGGGAACTGTATCAAAGAGCACTGTCAATTGACTCGACAACTGAAAGTGCTGCTCGATGTTTACAGGCTTGGGGTGTTTTGGAACAAAGAGCTGGTAACTTATCGGCAGCTCGAAGATTATTTAGATCCTCTCTCAATATAAATTCTCAGAGTTATGTAACATGGATGACATGGGCAGCATTGGAGGAGGATCAAGGAAATTCCATGCGTGCTGAAGAAATCCGTGACCTCTACTTCCAGCAGCGTACTGAAGTGGTGGATGATGCTTCCTGGGTAATGGGATTTTTAGATGTAATTGATCCAGCCCTTGACAGCATAAAAAGACTCCTGAGCTTTGATCAAGACCGGAGCAACAAGTCAGAGGAACCTCCAAAAGAATCAGGAGATGATGAAAACAGTGCTCAAGAACCATTGCTTAGCCCATCCTCTGGACAAAATATGGGCATTGACATCGAAAGTGGAAGTGGATTTGATTTAGATGTTTTCATTAAAGATAAATTGTCATTAGACCCATCTAATCTGGACAGTGTGATGGAAAACCCTGAAAAGCGGGCTCCTACGAGAATGAAACCTCCAAGAAGAGTTTGGAGATCACAGAAAAGAACCACCATGACTTTTCCTCAGCCCAGCATCAGCATATAG
Protein:  
MRLFSSSPSTTSPKPNFTLFSPSQNPNKFNFKTVSPFKTRLPSSSLLSVPPCSSKSSSSSPVLDKEAEKEDSVEAQKEDTFEKVLIVRRPVMDSSGEDGRENEESEAEAENDATKSSSIDAGLEEFAKKMPIFEPERMESGAAQEKPLSVNLDLALYKARVLARKYQYEEAEKILQKCIYYWPEDGRSYVTLGKILIKQSKKAEARVVYERGCQATQGENPYIWQCWAVLENKVGNIRRARELFDAATVADKRHIAAWHGWAVLELKQGNVKKARHLLAKGLKFCGGNEYIYQTLAMLEAKANRYEQARYLFRQATKCNPKSCASWLAWAQLEVQQENIRSARLLFEKAVQASPKNRFAWHVWGVFEANIGNTDMGRKLLKIGHAVNPRDPVLLQSLALLEYKHSTANLARVLFRRASELDPRHQPVWIAWGWMEWKEGNISSARELYQRALSIDSTTESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWAALEEDQGNSMRAEEIRDLYFQQRTEVVDDASWVMGFLDVIDPALDSIKRLLSFDQDRSNKSEEPPKESGDDENSAQEPLLSPSSGQNMGIDIESGSGFDLDVFIKDKLSLDPSNLDSVMENPEKRAPTRMKPPRRVWRSQKRTTMTFPQPSISI